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Article: Synapse-associated protein 97 regulates the membrane properties of fast-spiking parvalbumin interneurons in the visual cortex.

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Akgul G; Wollmuth LP
J. Neurosci., 2013


Table 1.

Primer list for single-cell RT-PCR

Marker GenBank Accession number First PCR primers Size (bp) Second PCR primers Size (bp)
GAD65 NM_08078.2 Sense, 99: CCAAAAGTTCACGGGCGGa 375 Sense, 219: CACCTGCGACCAAAAACCCT 248
Antisense, 454: TCCTCCAGATTTTGCGGTTGa Antisense, 447: GATTTTGCGGTTGGTCTGCC
GAD67 NM_008077.4 Sense, 83: ATGATACTTGGTGTGGCGTAGCa 253 Sense, 159: CAATAGCCTGGAAGAGAAGAGTCG177 177
Antisense, 314: GTTTGCTCCTCCCCGTTCTTAGa Antisense, 314: GTTTGCTCCTCCCCGTTCTTAG
PV NM_013645.3 Sense, 67: GATAGGAGCCTTTGCTGCTG 281 Sense, 124: GGGCCTGAAGAAAAAGAACC 224
Antisense, 347: CAGCCACCAGAGTGGAGAAT Antisense, same as the first PCR
SAP97 NM_007862.3 Sense, 481: AAGGCAAATCCTCCTCCAGT 964 Sense, same as the first PCR 239
Antisense, 1445: ACCGATATGATGCGATCTCC Antisense, 719: TTTACCCGCAATCTTCCATC
3′ UTR NM_007862.3 Sense, GGTTTGGCCAGTGTATTAGCTC Sense, GTCCTCCACACTGACACAGATC 380
Antisense, GAGCTAATACACTGGCCAAACC Antisense, CAGAGCCGTAACCACAGTGTAC
VGlut1 NM_182993.2 Sense, 124: CCCTTAGAACGGAGTCGGCTb 593 Sense, 148: ACGACAGCCTTTTGCGGTTCb 367
Antisense, 697: TATCCGACCACCAGCAGCAGb Antisense, 495: CAAAGTAGGCGGGCTGAGAGb
  • Position 1 is the first base of the start codon. The SAP97 primers are pan-SAP97 recognizing both the α and β isoforms.

  • aKaragiannis et al., 2009.

  • bVullhorst et al., 2009.


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