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Article: Two populations of layer v pyramidal cells of the mouse neocortex: development and sensitivity to anesthetics.

Full Text (publisher's website) ; Article Metadata ; Article Data (extracted)
Christophe E; Doerflinger N; Lavery DJ; Molnár Z; Charpak S; Audinat E
J. Neurophysiol., 2005



TABLE 1.List of the primers used to detect the mRNA expression of 24 genes in the two populations of layer V pyramidal cells by RT-PCR single cell


Gene Name Sense and Antisense Primer Sequences (Initial Position) Primer Size, pb Amplicon Size, pb GenBank Reference

Kv1.2 GAG AAC CTC AGC TCC TGC CT (501) 20 590 M30440
CTT CCT TGA TGT AGC CTT CAT (1523) 21
Kv4.2 GTT ACC GTT TCG TGC GCA GT (751) 20 450 AF107780
TAG CGC AAT GAC CAA GAC TC (1200) 20
Kv4.3M/L GAA GCT CCA ATG CCT ACC TG (1307) 20 421/478 AF107781
CAA ATT AAG GCT GGA GCG AC (1728/1785) 20
α1A CAC TCA AGC TGG TGT CTG GA (467) 20 333 NM_007578
GGA AAA CAG TGA GCA CAG CA (799) 20
α1B ACA TTC GTG GTC TCT CCA CC (4375) 20 306 NM_007579
GAG GCG AAG GAAGCT TAG GT (4680) 20
α1C CCA GCC CAG AAA AGA AAC AG (3530) 20 271 NM_009781
ACT GCC TTT TCC TTA AGG TGC A (3780) 22
α1D ATT GCC AGA AAA GAA AGC CTA GA (2450) 23 321 NM_028981
AAT GAG CTT GTG GCA ACC CAC (2770) 21
α1E ATG GAG ACT CGG ACC AGA GC (509) 20 248 NM_009782
GGT GGC CAG GAT CAT GTA CTC (757) 21
α1G GAT GGT ACC TCA CAC TGA GG (5916) 20 207 NM_009783
GGT TGG GAG TGA ACA GAC AA (6122) 20
α1H AGG ACG CAG CAG AGT TTG AT (3753) 20 287 NM_021415
GTT GGA GAC GCT GAG AAA GG (4029) 20
α1I ATG CTG GTG ATC CTG CTG AAC (79) 21 300 AF393329hu
GCA CGC GGT TGA TGG CTT TGA G (400) 22
HCN1 AGG TTA ATC AGA TAC ATA CAC C (1008) 22 231 AJ225123
GAG TGC GTA GGA ATA TTG TTT T (1238) 22
HCN2 CGG CTC ATC CGA TAT ATC CA (978) 20 230 AJ225122
AGC GCG AAC GAG TAG AGC TC (1207) 20
mGluR3 CAA GAA AAC ATC CCA CTG CTC A (767) 22 364 NM_181850
TAG GAC TTG CGG ATG TTG GAG C (1131) 22
mGluR5a/b GCC TTC GTG CCT ATC TAC TTT G (2623) 22 377/473 NM_017012
TTG GGG TTC TCC TTC TTG TTG A (2999) 22 Rat
Neurotrypsin GAG AGG CCA CAG AAA ACA GC (1947) 20 337 Y13192
AAG GTA CAA AAG CGG GGA CT (2283) 20
I-1 CGA CAA CAG CCC ACG GAA GAT C (13) 22 486 AF281676
GAA TCC AGT GGT AGC ATG TG (498) 20
PN-1 CTT TCC TGT TTT CCA TCC GA (1272) 20 254 X70296
GCC CTT TCT TCT GAC ACA GC (1525) 20
CCK CGC ACT GCT AGC GCG ATA CA (244) 20 217 NM_031161
TTT CCT CAT TCC ACC TCC TC (460) 20
COX4 ATG TTG GCT TCC AGA GCG CTG A (56) 22 507 M37829
CTT CTT CCA CTC ATT CTT GTC ATA G (562) 25
OTX1 GTT CGC AAA GAC TCG CTA CC (1659) 18 242 AF424700
AAG CAG AGC TAG ATA CGGT CG (3211) 20
Bcl6 TTC TTC CAG TTG CAG GCT TT (1210) 20 775 U41465
TGC AGG AAG TTC ATC AAG GC (461) 20
Calbindin-28K GAC GGA AGT GGT TAC CTG GA (212) 20 416 NM_009788
AGT TCC AGC TTT CCG TCA TTA (627) 21
Ten-m3 ACC AAC GGG TGT CTG AAA AG (4868) 20 216 AB025412
GTC CAC CGT GAT AGC CTT GT (5083) 20

Detailed in this table are the abbreviated names of genes, the sequences of the sense and reverse primers given from the 5' and 3' and their initial position (number in parentheses), the size of the primer, the size of the PCR amplified product, and the accession number in GenBank. The amplified genes correspond to the potassium channel subunits Kv1.2, Kv4.2, and Kv4.3; the calcium channel subunits α1A, α1B, α1C, α1D, α1E, α1G, α1H, and α1I; the hyperpolarization-activated channel subunits HCN1 and HCN2; the glutamate metabotropic receptor subunits mGluR3 and mGluR5; the neurotrypsin (neuro.); the inhibitor of phosphatase 1 (1I); the protease nexin 1 (PN1); cholecystokinin (CCK); polypeptidic complex IV of the cytochrome C oxidase (Cox-4); orthodenticle homolog 1 (Otx-1); transcriptional repressor Bcl 6, calcium-binding protein calbindin 28K; and a substrate of the tyrosine kinase II (Ten-m3).

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Neuron Type Neuron Description Ephys Prop Extracted Value Standardized Value Content Source